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Mappings

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Aquilegia coerulea
  Phytozome v9.0
          Acoerulea_195 download (m02, text, excel )  (1.0)
Arabidopsis lyrata
  Phytozome v9.0
          Alyrata_107 download (m02, text, excel )  (1.0)
Arabidopsis thaliana
  Affymetrix
          Ath_AFFY_ATH1_TAIR8_Jan2010 download (m02, text, excel )  (1.1)
          Ath_AFFY_ATH1_TAIR9_Jan2010 download (m02, text, excel )  (1.1)
          Mapping_overview_Affymetrix_2005 download (m02, text, excel )  (5.0c1)
          ath_affy_8k_experimental download (m02, text, excel )  (0.6)
          ath_affy_tair6 download (m02, text, excel )  (Sep06)
          Ath_AFFY_TAIR7 download (m02, text, excel )  (Aug08)
          Ath_AFFY_ATH1_TAIR8_041208 download (m02, text, excel )  (1.0)
          Ath_AFFY_ATH1_TAIR10_Aug2012 download (m02, text, excel )  (1.0)
          Ath_AFFY_STv1.1_TRANSCRIPT_CLUSTER_TAIR10_LOCUS download (m02, text, excel )  (1.0)
  AGILENT
          Ath_AGILENT_TAIR8_0609 download (m02, text, excel )  (1.0)
  TAIR 6
          Ath_AGI_TAIR6 download (m02, text, excel )  (SEP06)
  TAIR 7
          Ath_AGI_TAIR7 download (m02, text, excel )  (June07)
          Ath_AGI_TAIR7 download (m02, text, excel )  (July07)
  TAIR 8
          Ath_AGI_TAIR8 download (m02, text, excel )  (Dec08)
  TAIR10
          Ath_AGI_LOCUS_TAIR10_Aug2012 download (m02, text, excel )  (1.0)
          Ath_AGI_ISOFORM_MODEL_TAIR10_Aug2012 download (m02, text, excel )  (1.0)
  TAIR9
          Seed_custom_arabidopsis download (m02, text, excel )  (1)
          Ath_AGI_TAIR9_Jan2010 download (m02, text, excel )  (1.0)
          Ath_AGI_MODELS_TAIR9_Jan09 download (m02, text, excel )  (1.0)
  no id type
          MappingMetabolites download (m02, text, excel )  (1.0)
          Mapping_overview_AgiCode download (m02, text, excel )  (5.0b2)
          ath_catma_experimental download (m02, text, excel )  (0.6)
Brachypodium distachyon
  Phytozome v9.0
          Bdistachyon_192 download (m02, text, excel )  (1.0)
Brassica napus
  Affymetrix
          BrasEX1s_unigene download (m02, text, excel )  (1.0)
Brassica rapa
  Phytozome v9.0
          Brapa_197 download (m02, text, excel )  (1.0)
Capsella rubella
  Phytozome v9.0
          Crubella_183 download (m02, text, excel )  (1.0)
Carica papaya
  Phytozome v9.0
          Cpapaya_113 download (m02, text, excel )  (1.0)
Chlamydomonas reinhardtii
  Phytozome v9.0
          Creinhardtii_236 download (m02, text, excel )  (1.0)
  no id type
          Chlamydomonas rheinhardtii download (m02, text, excel )  (Nov07)
Citrus clementina
  Phytozome v9.0
          Cclementina_182 download (m02, text, excel )  (1.0)
Citrus sinensis
  Phytozome v9.0
          Csinensis_154 download (m02, text, excel )  (1.0)
Citrus spp.
  Affymetrix
          Citrus_AFFY_Jul10 download (m02, text, excel )  (1.0)
Coccomyxa subellipsoidea C-169
  Phytozome v9.0
          CsubellipsoideaC169_227 download (m02, text, excel )  (1.0)
Cucumis sativus
  Phytozome v9.0
          Csativus_122 download (m02, text, excel )  (1.0)
  no id type
          Chloroplast PlasTi-microarray mapping download (m02, text, excel )  (1.0)
Eucalyptus grandis
  Phytozome v9.0
          Egrandis_201 download (m02, text, excel )  (1.0)
Fragaria vesca
  Phytozome v9.0
          Fvesca_226 download (m02, text, excel )  (1.0)
Glycine max
  Affymetrix
          Gmax_AFFY_09 download (m02, text, excel )  (1.0)
  genome_release
          Gmax_109_peptide download (m02, text, excel )  (1.1)
  Phytozome v9.0
          Gmax_189 download (m02, text, excel )  (1.0)
Gossypium hirsutum
  Affymetrix
          Cotton_AFFY_Jan12 download (m02, text, excel )  (1.0)
  no id type
          Ghir_MAPPING_Feb10 download (m02, text, excel )  (1.0)
Gossypium raimondii
  Phytozome v9.0
          Graimondii_221 download (m02, text, excel )  (1.0)
Hordeum vulgare
  Affymetrix
          Hvu_Affy download (m02, text, excel )  (1.1)
  AGILENT
          Hvul_AGILENT_DESIGNID_021623 download (m02, text, excel )  (1.0)
  genome_release
          HVU_MIPSV1.0 download (m02, text, excel )  (1.0)
Linum usitatissimum
  Phytozome v9.0
          Lusitatissimum_200 download (m02, text, excel )  (1.0)
Malus domestica
  Phytozome v9.0
          Mdomestica_196 download (m02, text, excel )  (1.0)
Manihot esculenta
  Phytozome v9.0
          Mesculenta_147 download (m02, text, excel )  (1.0)
Medicago truncatula
  Affymetrix
          Mt_AFFY_Mt3.0_0510 download (m02, text, excel )  (1.0)
          Medicago_AFFY_09 download (m02, text, excel )  (1.0)
  genome_release
          Mt_Mt3.0_0510 download (m02, text, excel )  (1.0)
          Mt_Mt3.5_v3_0411 download (m02, text, excel )  (1.0)
  Phytozome v9.0
          Mtruncatula_198 download (m02, text, excel )  (1.0)
  no id type
          Medicago16k download (m02, text, excel )  (1.0)
Micromonas pusilla CCMP1545
  Phytozome v9.0
          MpusillaCCMP1545_228 download (m02, text, excel )  (1.0)
Mimulus guttatus
  Phytozome v9.0
          Mguttatus_140 download (m02, text, excel )  (1.0)
Nicotiana tabacum
  AGILENT
          Ntob_AGILENT44K_mapping download (m02, text, excel )  (1.0)
Oryza sativa Japonica Group
  Affymetrix
          Osa_AFFY_150909 download (m02, text, excel )  (1.0)
  MSU_v7
          Osa_MSU_v7 download (m02, text, excel )  (1.0)
  OSGI
          OSGI.release_19.mapping download (m02, text, excel )  (1.0)
  Phytozome v9.0
          Osativa_204 download (m02, text, excel )  (1.0)
  RAPDB-IRGSP1.0
          Osa_RAPDB_mapping download (m02, text, excel )  (1.0)
  no id type
          Rice_japonica_automatic_mapping08 download (m02, text, excel )  (08)
          Rice_japonica_mapping_merged_08 download (m02, text, excel )  (1.0)
          Rice_japonica_manual_mapping08 download (m02, text, excel )  (08)
Ostreococcus lucimarinus
  Phytozome v9.0
          Olucimarinus_231 download (m02, text, excel )  (1.0)
Panicum virgatum
  Affymetrix
          Pvi_cDNAa520831.mapping download (m02, text, excel )  (1.0)
Physcomitrella patens
  Phytozome v9.0
          Ppatens_152 download (m02, text, excel )  (1.0)
Populus trichocarpa
  Affymetrix
          Ptrich_AFFY_09 download (m02, text, excel )  (1.0)
  JGIv1.1
          Ptr_JGI1_1_0309 download (m02, text, excel )  (1.0)
  Phytozome v9.0
          Ptrichocarpa_v3.0_210_peptide download (m02, text, excel )  (1.0)
Prunus persica
  Phytozome v9.0
          Ppersica_139 download (m02, text, excel )  (1.0)
Ricinus communis
  Phytozome v9.0
          Rcommunis_119 download (m02, text, excel )  (1.0)
Saccharum officinarum
  Affymetrix
          Soff_AFFY_09 download (m02, text, excel )  (1.0)
Selaginella moellendorffii
  Phytozome v9.0
          Smoellendorffii_91 download (m02, text, excel )  (1.0)
Setaria italica
  Phytozome v9.0
          Sitalica_164 download (m02, text, excel )  (1.0)
Solanum lycopersicum
  Affymetrix
          Slyc_AFFY_SGN_BUILD2_070709 download (m02, text, excel )  (1.1)
  AGILENT
          Slyc_AGILENT44k_SGN_BUILD2 download (m02, text, excel )  (1.0)
  ITAG2.3
          Slyc_ITAG2.3 download (m02, text, excel )  (1.1)
  SGN
          SGN_UnigeneR2_commodity download (m02, text, excel )  (1.0)
          Ses_SGNR200607 download (m02, text, excel )  (31-05-2007)
          Slyc_SGN_BUILD2_070709 download (m02, text, excel )  (1.1)
  no id type
          Ses_EUTOM1 download (m02, text, excel )  (Nov08)
          Ses_TOM1 download (m02, text, excel )  (Sep06)
          Ses_Unigene download (m02, text, excel )  (Sep06)
          Ses_TOM2 download (m02, text, excel )  (May07)
Solanum tuberosum
  genome_release
          Stub_PGSC_DM_v3.4 download (m02, text, excel )  (1.0)
  Phytozome v9.0
          Stuberosum_206 download (m02, text, excel )  (1.0)
  SGN
          Stub_SGN_UNIGENES_0609 download (m02, text, excel )  (1.0)
  no id type
          Stu_TIGR download (m02, text, excel )  (August07)
          Potato_POCI download (m02, text, excel )  (Sep08)
Sorghum bicolor
  Phytozome v9.0
          Sbicolor_79 download (m02, text, excel )  (1.0)
Thellungiella halophila
  Phytozome v9.0
          Thalophila_173 download (m02, text, excel )  (1.0)
Thellungiella salsuginea
  AGILENT
          Thels_AGILENT44k download (m02, text, excel )  (1.0)
Theobroma cacao
  Phytozome v9.0
          Tcacao_233 download (m02, text, excel )  (1.0)
Triticum aestivum
  Affymetrix
          Taes_AFFY_0709 download (m02, text, excel )  (1.0)
  DFCI wheat gene index
          Taes_TAGI_release_12 download (m02, text, excel )  (1.0)
  genome_release
          IWGSP_MIPSv2.2 download (m02, text, excel )  (2.2)
Vitis vinifera
  Affymetrix
          Vvin_AFFY_09 download (m02, text, excel )  (0.2)
  OPERON
          Vvi_VVGIv5_OPERON_09 download (m02, text, excel )  (1.0)
  Phytozome v9.0
          Vvinifera_145 download (m02, text, excel )  (1.0)
  VvGI version 5
          Vvi_VVGIv5_09 download (m02, text, excel )  (1.0)
Volvox carteri
  Phytozome v9.0
          Vcarteri_199 download (m02, text, excel )  (1.0)
Zea mays
  Affymetrix
          Zma_AFFY_chromosomal_locations download (m02, text, excel )  (1.1)
  AGILENT
          ZM_AGILENT_TARGETS_0509 download (m02, text, excel )  (1.0)
          Zm_AGILENT_PROBES_0509 download (m02, text, excel )  (1.0)
  genome_release
          Zm_GENOME_RELEASE_09 download (m02, text, excel )  (1.0)
          Zm_B73_5b_FGS_cds_2012 download (m02, text, excel )  (1.1)
  Phytozome v9.0
          Zmays_181 download (m02, text, excel )  (1.0)
  no id type
          ZMGI.060509 download (m02, text, excel )  (1.0)
undefined species
  no id type
          BIN2EC download (m02, text, excel )  (1.0)
          R_mapping download (m02, text, excel )  (1.0)
          ChlorPlast_customarray download (m02, text, excel )  (1)
          BIN2GO download (m02, text, excel )  (1.0)

Download MapMan

 

Here are the installables for the most recent version of MapMan.

For more information please refer to the PageMan application page.

If you have questions regarding MapMan don't hesitate to use our forum.

 

   Thanks for working with MapMan, your MapMan Team.

              mapman@mpimp-golm.mpg.de     

 

 

Version 3.6.0RC1 (19.06.2013 RELEASE CANDIDATE)

  • New detail view on multiple data diagrams (right click, show details, show multiple graphs). Credits go to Elijah Myers of Virginia Tech
  • New type of installers which need Java to be installed
  • The search for publications concerning a given gene has been updated to use NCBI EUtils
  • Small changes to the data filter interface
  • Someusability enhancements
  • See installation instructions

Version 3.5.1 (19.11.2010) download

  • Small BUGFIX release
  • BUGFIX: alignment options when editing pathways where blocked
  • BUGFIX: VennDIagramm4 misinterpretation of data due to typo
  • SMALL FEATURE: enabled data blocks to be displayed larger
  • SMALL FEATURE: Venn diagramms now have the sets names displayed

Version 3.5.0 (26.05.2010) download

  • PageMan Integration
  • More image exports
  • Easier data export
  • More mouse over informational displays

Version 3.1.1 (4.02.2010) download

  • BUGFIXES: drag n drop of between pathway and cluster fixed
  • ENHANCEMENT: locus 2 publications initialization monitored
  • BUGFIX:interactive popup reshow problems fixed
  • Venn diagram visualization
  • Requests related publications from TAIR' s agi 2 locus service
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX users





Version 3.5.1 (19.11.2010) download

  • Small BUGFIX release
  • BUGFIX: alignment options when editing pathways where blocked
  • BUGFIX: VennDIagramm4 misinterpretation of data due to typo
  • SMALL FEATURE: enabled data blocks to be displayed larger
  • SMALL FEATURE: Venn diagramms now have the sets names displayed

Version 3.5.0 (26.05.2010) download

  • PageMan Integration
  • More image exports
  • Easier data export
  • More Mouse over informational displays

Version 3.1.1 (4.02.2010) download

  • BUGFIXES: drag n drop of between pathway and cluster fixed
  • ENHANCEMENT: locus 2 publications initialization monitored
  • BUGFIX:interactive popup reshow problems fixed
  • Venn diagram visualization
  • Requests related publications from TAIR' s agi 2 locus service
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX user

Version 3.1.1 (4.02.2010) download

  • BUGFIXES: drag n drop of between pathway and cluster fixed
  • ENHANCEMENT: locus 2 publications initialization monitored
  • BUGFIX:interactive popup reshow problems fixed
  • Venn diagram visualization
  • Requests related publications from TAIR' s agi 2 locus service
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX user

Version 3.1.0 (29.01.2010) download

  • New Features: Venn diagram visualization
  • Requests related publications
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX users

Version 3.0.0 (17.06.2009) download

  • New Features: includes mapping multiple data sets onto one pathway
  • New exportable table based displays of mapped data for pathway visualization
  • Many usability enhancements and the usual bug fixes
  • Fixed MS Windows Vista Problems

Version 2.2.0 (08.07.2008) download

  • New Features: includes data mapping onto chromosomal maps
  • New Features: a simplified first user interface
  • revised error messages in the case of user errors
  • fixes the most prominent missing deleted files bug and many others

Version 2.1.1 (12.09.2007) download

  • New Features: includes clustering visualization
  • better integrated proxy support
  • usability enhancements and bug fixes

Version 2.0.0 (23.09.2006)

  • support to filter by derived data, p-values or others
  • new edit mode for annotating pathways (alignment functions, multiple move, ..)
  • multiple links to public databases ( TAIR, GabiD )
  • new export data features
  • TAIR6 support
  • enhanced user interfaces

Version 1.8.1 (23.06.2006)

  • drag, drop and copy for mappings and pathways
  • multiple colour schemes
  • pathway icon preview
  • enhanced user interfaces
  • enhanced data export features

Version 1.8.0 (30.01.2006)

  • Data types can now be represented by different graphical symbols. The "symbols" graphical representation is now default for all which used to be points. If data should be displayed as points only the mode can be overriden from on pathway or on single bin level by switching to the original points interface.
  • Added map after adding or editing annotation areas on the pathway to ensure that previously unknown bins data is mapped.
  • Added last data provider active to allow for new pathways to show the last active data.

Version 1.7.0 (19.12.2005)

  • statistic exportable
  • multiple testing corrections available
  • images can now be exported with given resolution
  • performance enhancements (mappings are now stored in a local database)
  • various bugfixes

Version 1.6.3 (23.09.2005)

  • new pathways and mappings
  • performance enhancements (still ongoing effort)
  • various bugfixes

Version 1.6.0 (08.06.2005)

  • Custom multi format data loading including multi experiment files
  • Color legend
  • Wilcoxon rank sum to rank the bins according to their changes
  • Diverse bugfixes

Version 1.4.3 (01.09.2004)

  • New Feature: with search gene function

Version 1.4.2 (02.06.2004)

  • Integration of MapManStore (up to date Pathways and Mappings can be loaded from remote MapManStore server).
  • Now supports reading of mapping and data files as tab delimited text files.
  • Enhanced Installation routines now checks if software has been updated
  • bugfix: Help window size on MSWindows fixed.
  • bugfix: Error while printing when rescaling image
  • bugfix: Wrong error message displayed when loading double entries in data files
  • Enhanced the image saving routine to autoappend image type extensions if missing

Version 1.4.1 (23.03.2004)

  • New info to clipboard function to copy information from pathway to clipboard.
  • Contains AGI codes in supplied mapping.

Version 1.4.0 (02.03.2004)

  • Major internal revision (essential for new upcoming features), please post bugs on the forum
  • Experiment folders now go into a seperate top level folder.
  • Whole directories can be read as experiments at once.
  • Automatic inclusion of sub bins can be switched off.
  • Visualization mode can be changed for whole pathways to override local settings for single visualization.

Version 1.3.6 (21.01.2004)

  • New Feature: warning appears if installed java version is lower than java 1.4

Version 1.3.5 (21.01.2004)

  • New Feature: keyboard support for moving the annotated dots (klick on the annotated areas, afterwards hold down Alt and press the arrow keys to position)

Version 1.3.4 (01.12.2003)

  • Storing of scaling, datasize and background option individually for each pathway
  • Bug Fix: Display does not update immediately after changing scaling
  • Bug Fix: Popup menus on pathways do not come up correctly if scolling on large images

Version 1.3.3 (26.11.2003)

  • Added dialog if the annotation file cannot be read
  • Added support for opening pathways in the png ang jpg type

Version 1.3.2 (25.11.2003)

  • Storing of scaling, datasize and background option individually for each pathway
  • Bug Fix: Display does not update immediately after changing scaling
  • Bug Fix: Popup menus on pathways do not come up correctly if scolling on large images