MapMan Guest

MapMan is a user-driven tool that displays large datasets (e.g. gene expression data from Arabidopsis Affymetrix arrays) onto diagrams of metabolic pathways or other processes.

MapMan was developed in cooperation with the group of Mark Stitt. For technical details, please contact Axel Nagel, for other questions, please contact Björn Usadel.

• Version 3.5.0 BETA (26.05.2010) download

  • PageMan Integration
  • More image exports
  • Easier data export
  • More mouse over informational displays
• Download Version 3.1.0 (08.01.2010)   Version 3.1.0 from 29.01.2010 (history)
  • New Features: Venn diagram visualization
  • Requests related publications
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX users
  • For full details see Version History
  • See installation instructions
• View Applicable License agreement
• The Ultimate MapMan Install and Usage Guide MapManGuid.pdf * new .
• Download MapMan pathway, mapping and sample data files.
  Get source data. Mapping files available in m02, text and xml format.
• MapMan Forum:
  Post your questions, feature request and bug reports.
• MapMan web-application: View some sample data sets.
• MapMan annotation experts
• References:
  • Reference: Usadel B, Poree F, Nagel A, Lohse M, Czedik-Eysenberg A, Stitt M (2009) A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. Plant Cell Environment, 32: 1211-1229
  • Reference: Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE, Palacios-Rojas N, Selbig J, Hannemann J, Piques MC, Steinhauser D, Scheible WR, Gibon Y, Morcuende R, Weicht D, Meyer S and M Stitt (2005), Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiol. 138::1195-204. 82 times cited (October 2009).
  • Reference: Thimm O, Blaesing O, Gibon Y, Nagel A, Meyer S, Krüger P, Selbig J, Müller LA, Rhee SY and M Stitt (2004) MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37(6):914-39.
    Selected as fast breaking paper in plant and animal sciences:
    http://www.esi-topics.com/fbp/2005/february05-OliverThimm.html
    272 times cited (October 2009).
• Acknowledgement: We would like to thank the TAIR team for their kind support in data annotation and good advices.