Map file Osa_MSU_v7 lacking many gene loci, such as several NAC Transcription factors (http://planttfdb.cbi.pku.edu.cn/download/TF_list/Osj_TF_list.gz).
The missing 25 NAC TFs are listed below, while they can be mapped using Rice_japonica_mapping_merged_08. However, there are several differences between the output figures after using these two mapping files, as you can see the attached snapshot. Besides lacking NAC TFs, Osa_MSU_v7 seems to neglect some genes in other categories, such as "metal binding', "Heat" stress, and "GA" hormone.
Thanks for your help.
loc_os12g03050.1
loc_os01g66120.1
loc_os11g08210.1
loc_os11g03300.1
loc_os05g34830.1
loc_os03g60080.1
loc_os03g04070.1
loc_os06g51070.1
loc_os01g70110.1
loc_os05g37080.1
loc_os11g05614.1
loc_os12g03040.1
loc_os12g05990.1
loc_os03g56580.1
loc_os03g21060.1
loc_os01g60020.1
loc_os07g48450.1
loc_os01g64310.1
loc_os07g12340.1
loc_os03g21030.1
loc_os06g46270.1
loc_os09g33490.1
loc_os12g29330.1
loc_os02g15340.1
loc_os07g04560.1