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Mapping file for popArray

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Mapping file for popArray
Válasz
2009.08.13. 20:26
I want to use MAPMAN to analyze our poplar gene expression data, but seemly, there are not suitable mapping files now available for this. What can I do? It will be appreciated if you can do these files for us or tell us how to do. Now, we have related GO information of genes on our popArrays. Thanks a lot!

Horace

Re: Mapping file for popArray
Válasz
2009.08.14. 7:23 válaszként erre: horace wang.
Dear Horace,

which platform is this array? I think we have poplar-Affymetrix at least prepared using automated procedures, which we could make aivable.

Cheers,
bjoern

Re: Mapping file for popArray
Válasz
2009.08.15. 22:16 válaszként erre: horace wang.
Thanks for your prompt reply, Bjoern! my platform is Agilent array. Horace

Re: Mapping file for popArray
Válasz
2009.08.21. 15:55 válaszként erre: horace wang.
Hi, Bjoern,

I'm using the mapping file called Ptr_JGI1_1_0309. Would you like to tell me how many JGI ids encapsulated in it? Thanks very much!

Horace

Re: Mapping file for popArray
Válasz
2009.08.24. 8:21 válaszként erre: horace wang.
Dear Horace,

the Ptr_JGI1_1_0309 mapping contains 45555 unique JGI IDs.

Best greetings,
Marc

Re: Mapping file for popArray
Válasz
2009.08.25. 14:16 válaszként erre: horace wang.
Thanks very much!