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edgeR error

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edgeR error
Answer
5/29/14 4:44 AM
Hi Mapman team,

With the duplicate for each samples, I have performed edgeR and the error message pop up like attached one. In spite of this message, some MAplot and vennDiagram could be shown in the plot folder, but there is no pdf result file. Could I trust the result from this run?

Thank you in advance for you help.

Jin

RE: edgeR error
Answer
5/29/14 5:56 PM as a reply to jinhyoung Kim.
Hi

I looks like you ran out of memory. How large was the dataset you were working on?

Best
bjrön

RE: edgeR error
Answer
5/29/14 11:26 PM as a reply to Björn Usadel.
Hi bjrön,

Thank you for your reply. Actually, I had asked about small number of DEGs by DESeq and got your reply about it at the last post. I had run edgeR with the raw count table that worked well for the DESeq. My data set is for 3 treatments and 1 control. All group are duplicate and there are 116,575 genes in the count table. FYI, my dest top has a Intel(RO Xeon(R) CPU E5-1603 0 @2.80GHz and 64 GB RAM.

Thank you,

Jin