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Mapping files for Sorghum

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Jose Gonzalez Rank: Youngling Posts: 5 Join Date: 3/23/12 Recent Posts	Mapping files for Sorghum Answer 5/9/12 7:40 PM I was wondering if would be possible to generate the mapping files for sorghum using the phyzome annotations. The location of the file is ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v8.0/Sbicolor/annotation/ and Sbicolor_79_annotation_info.txt.gz is the file name. Thank you Jose
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Marc Lohse

Rank: Jedi Master

Posts: 271

Join Date: 6/30/09

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RE: Mapping files for Sorghum

Answer

5/21/12 12:07 PM as a reply to Jose Gonzalez.

Dear Jose,

i cannot create a MapMan mapping using the annotations provided in the file you referred to -
i can, however, create a mapping using the protein or nucleotide sequences of the genes
listed in the annotation file. So, unless you tell me otherwise, i would use the Sbicolor_79_peptide.fa.gz
file to generate a mapping (?).

Best greetings,
Marc