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Integrating protein data with transcript data

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Kameswara Rao Kottapalli Rank: Youngling Posts: 24 Join Date: 12/26/09 Recent Posts	Integrating protein data with transcript data Answer 11/1/10 4:07 PM Hi Axel / Marc Lohse, I have a mapping file with transcript data. Can you please explain me how I can integrate protein data into this. Can I generate a different mapping file with protein sequences and then append with the transcript mapping file. Thank you for your time and constant help. Regards Rao
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Axel Nagel

Rank: Jedi Knight

Posts: 193

Join Date: 6/30/09

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RE: Integrating protein data with transcript data

11/2/10 9:12 AM as a reply to Kameswara Rao Kottapalli.

You may map the protein data separately and then merge the mappings.
If you use the mappings files in text or ms excel format, you may just merge both mappings and remove non unique lines.
You should also mark the the protein data as of type protein.
Textor excel MappingFileStructure:

BINCODE NAME IDENTIFIER DESCRIPTION TYPE

Valid values(single letter) within the type field are:

T TYPE_TRANSCRIPT
M TYPE_METABOLITE
P TYPE_PROTEIN
E TYPE_ENZYME;
D TYPE_DERIVED;

Axel

Kameswara Rao Kottapalli Rank: Youngling Posts: 24 Join Date: 12/26/09 Recent Posts	RE: Integrating protein data with transcript data Answer 11/2/10 2:40 PM as a reply to Axel Nagel. Thank you Axel, I will analyze the data and get back to you. Rao
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