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Zea mayz
Answer
9/18/18 4:06 PM
Hi,
I would like to use MAPMAN to analyze my data however the current mapping for Zea mayz is very outdated (2012) and I am working on RNAseq data from maize in which the genes are annotated according to the new genome version (AGPv4).
I was wondering whether you will release a new map file for maize or if there is another solution to this problem. I tried to use the Mercator 4 and to load the protein sequences (in fasta format) but I didn't get any results yet.

Thnaks,
Lior

RE: Zea mayz
Answer
9/19/18 7:51 AM as a reply to Lior Doron.
Hi Lior

we also have ENSEMBL39 maize files
https://github.com/usadellab/usadellab.github.io/tree/master/MapManJS/MappingFiles

We might just skip to ENSEMBL40 for the mapman store for autodownload.

In any case Mercator should give you results within maximally 20 minutes. (usually <5minutes)
Marie is checking what went wrong with your submission

Best Wishes
Björn

RE: Zea mayz
Answer
9/21/18 4:44 PM as a reply to Björn Usadel.
Hi Björn,

I couldn't find the maize files at the link that you sent me.
https://github.com/usadellab/usadellab.github.io/tree/master/MapManJS/MappingFiles
There are many other plants in there but I didn't see Zea mayz.
Is there a way to upload the maize mapping files to the forum.

Thanks,
Lior