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Mappings

BinTree Version:

Actinidia chinensis
   EnsemblPlants 44
           X4.2 actinidia_chinensis download (m02, text, excel )  (X4_R2.0)
Aegilops tauschii
   EnsemblPlants 44
           X4.2 aegilops_tauschii download (m02, text, excel )  (X4_R2.0)
Amborella trichopoda
   EnsemblPlants 44
           X4.2 amborella_trichopoda download (m02, text, excel )  (X4_R2.0)
Aquilegia coerulea
   Phytozome v9.0
           Acoerulea_195 download (m02, text, excel )  (1.0)
Arabidopsis halleri
   EnsemblPlants 44
           X4.2 arabidopsis_halleri download (m02, text, excel )  (X4_R2.0)
Arabidopsis lyrata
   EnsemblPlants 44
           X4.2 arabidopsis_lyrata download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Alyrata_107 download (m02, text, excel )  (1.0)
Arabidopsis thaliana
   Affymetrix
           Ath_AFFY_ATH1_TAIR8_Jan2010 download (m02, text, excel )  (1.1)
           Ath_AFFY_ATH1_TAIR9_Jan2010 download (m02, text, excel )  (1.1)
           Mapping_overview_Affymetrix_2005 download (m02, text, excel )  (5.0c1)
           ath_affy_8k_experimental download (m02, text, excel )  (0.6)
           ath_affy_tair6 download (m02, text, excel )  (Sep06)
           Ath_AFFY_TAIR7 download (m02, text, excel )  (Aug08)
           Ath_AFFY_ATH1_TAIR8_041208 download (m02, text, excel )  (1.0)
           Ath_AFFY_ATH1_TAIR10_Aug2012 download (m02, text, excel )  (1.0)
           Ath_AFFY_STv1.1_TRANSCRIPT_CLUSTER_TAIR10_LOCUS download (m02, text, excel )  (1.0)
   AGILENT
           Ath_AGILENT_TAIR8_0609 download (m02, text, excel )  (1.0)
   Araport11
           X4 Araport11 R1.0 download (m02, text, excel )  (X4_R1.0)
   EnsemblPlants 44
           X4.2 arabidopsis_thaliana download (m02, text, excel )  (X4_R2.0)
   TAIR 6
           Ath_AGI_TAIR6 download (m02, text, excel )  (SEP06)
   TAIR 7
           Ath_AGI_TAIR7 download (m02, text, excel )  (June07)
           Ath_AGI_TAIR7 download (m02, text, excel )  (July07)
   TAIR 8
           Ath_AGI_TAIR8 download (m02, text, excel )  (Dec08)
   TAIR10
           Ath_AGI_LOCUS_TAIR10_Aug2012 download (m02, text, excel )  (1.0)
           Ath_AGI_ISOFORM_MODEL_TAIR10_Aug2012 download (m02, text, excel )  (1.0)
   TAIR9
           Seed_custom_arabidopsis download (m02, text, excel )  (1)
           Ath_AGI_TAIR9_Jan2010 download (m02, text, excel )  (1.0)
           Ath_AGI_MODELS_TAIR9_Jan09 download (m02, text, excel )  (1.0)
   no id type
           MappingMetabolites download (m02, text, excel )  (1.0)
           Mapping_overview_AgiCode download (m02, text, excel )  (5.0b2)
           ath_catma_experimental download (m02, text, excel )  (0.6)
Beta vulgaris
   EnsemblPlants 44
           X4.2 beta_vulgaris download (m02, text, excel )  (X4_R2.0)
Brachypodium distachyon
   EnsemblPlants 44
           X4.2 brachypodium_distachyon download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Bdistachyon_192 download (m02, text, excel )  (1.0)
Brassica napus
   Affymetrix
           BrasEX1s_unigene download (m02, text, excel )  (1.0)
   EnsemblPlants 44
           X4.2 brassica_napus download (m02, text, excel )  (X4_R2.0)
   genome_release
           Brassica_napus.annotation_v5.cds.fa.gz download (m02, text, excel )  (5.0)
Brassica oleracea
   EnsemblPlants 44
           X4.2 brassica_oleracea download (m02, text, excel )  (X4_R2.0)
Brassica rapa
   EnsemblPlants 44
           X4.2 brassica_rapa download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Brapa_197 download (m02, text, excel )  (1.0)
Capsella rubella
   Phytozome v9.0
           Crubella_183 download (m02, text, excel )  (1.0)
Carica papaya
   Phytozome v9.0
           Cpapaya_113 download (m02, text, excel )  (1.0)
Chlamydomonas reinhardtii
   EnsemblPlants 44
           X4.2 chlamydomonas_reinhardtii download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Creinhardtii_236 download (m02, text, excel )  (1.0)
   no id type
           Chlamydomonas rheinhardtii download (m02, text, excel )  (Nov07)
Chondrus crispus
   EnsemblPlants 44
           X4.2 chondrus_crispus download (m02, text, excel )  (X4_R2.0)
Citrus clementina
   Phytozome v9.0
           Cclementina_182 download (m02, text, excel )  (1.0)
Citrus sinensis
   Phytozome v9.0
           Csinensis_154 download (m02, text, excel )  (1.0)
Citrus spp.
   Affymetrix
           Citrus_AFFY_Jul10 download (m02, text, excel )  (1.0)
Coccomyxa subellipsoidea C-169
   Phytozome v9.0
           CsubellipsoideaC169_227 download (m02, text, excel )  (1.0)
Corcorus capsularis
   EnsemblPlants 44
           X4.2 corchorus_capsularis download (m02, text, excel )  (X4_R2.0)
Cucumis sativus
   EnsemblPlants 44
           X4.2 cucumis_sativus download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Csativus_122 download (m02, text, excel )  (1.0)
   no id type
           Chloroplast PlasTi-microarray mapping download (m02, text, excel )  (1.0)
Cyanidioschyzon merolae
   EnsemblPlants 44
           X4.2 cyanidioschyzon_merolae download (m02, text, excel )  (X4_R2.0)
Daucus carota
   EnsemblPlants 44
           X4.2 daucus_carota download (m02, text, excel )  (X4_R2.0)
Dioscorea rotundata
   EnsemblPlants 44
           X4.2 dioscorea_rotundata download (m02, text, excel )  (X4_R2.0)
Eucalyptus grandis
   Phytozome v9.0
           Egrandis_201 download (m02, text, excel )  (1.0)
Fragaria vesca
   Phytozome v9.0
           Fvesca_226 download (m02, text, excel )  (1.0)
Galdieria sulphuraria
   EnsemblPlants 44
           X4.2 galdieria_sulphuraria download (m02, text, excel )  (X4_R2.0)
Glycine max
   Affymetrix
           Gmax_AFFY_09 download (m02, text, excel )  (1.0)
   EnsemblPlants 44
           X4.2 glycine_max download (m02, text, excel )  (X4_R2.0)
   genome_release
           Gmax_109_peptide download (m02, text, excel )  (1.1)
   Phytozome v9.0
           Gmax_189 download (m02, text, excel )  (1.0)
Gossypium hirsutum
   Affymetrix
           Cotton_AFFY_Jan12 download (m02, text, excel )  (1.0)
   no id type
           Ghir_MAPPING_Feb10 download (m02, text, excel )  (1.0)
Gossypium raimondii
   EnsemblPlants 44
           X4.2 gossypium_raimondii download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Graimondii_221 download (m02, text, excel )  (1.0)
Helianthus annuus
   EnsemblPlants 44
           X4.2 helianthus_annuus download (m02, text, excel )  (X4_R2.0)
Hordeum vulgare
   Affymetrix
           Hvu_Affy download (m02, text, excel )  (1.1)
   AGILENT
           Hvul_AGILENT_DESIGNID_021623 download (m02, text, excel )  (1.0)
   EnsemblPlants 44
           X4.2 hordeum_vulgare download (m02, text, excel )  (X4_R2.0)
   genome_release
           HVU_MIPSV1.0 download (m02, text, excel )  (1.0)
Leersia perrieri
   EnsemblPlants 44
           X4.2 leersia_perrieri download (m02, text, excel )  (X4_R2.0)
Linum usitatissimum
   Phytozome v9.0
           Lusitatissimum_200 download (m02, text, excel )  (1.0)
Lupinus angustifolius
   EnsemblPlants 44
           X4.2 lupinus_angustifolius download (m02, text, excel )  (X4_R2.0)
Malus domestica
   Phytozome v9.0
           Mdomestica_196 download (m02, text, excel )  (1.0)
Manihot esculenta
   EnsemblPlants 44
           X4.2 manihot_esculenta download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Mesculenta_147 download (m02, text, excel )  (1.0)
Marchantia polymorpha
   EnsemblPlants 44
           X4.2 marchantia_polymorpha download (m02, text, excel )  (X4_R2.0)
Medicago truncatula
   Affymetrix
           Mt_AFFY_Mt3.0_0510 download (m02, text, excel )  (1.0)
           Medicago_AFFY_09 download (m02, text, excel )  (1.0)
   EnsemblPlants 44
           X4.2 medicago_truncatula download (m02, text, excel )  (X4_R2.0)
   genome_release
           Mt_Mt3.0_0510 download (m02, text, excel )  (1.0)
           Mt_Mt3.5_v3_0411 download (m02, text, excel )  (1.0)
           Mt_Mt4.0_v1 download (m02, text, excel )  (1.0)
   Phytozome v9.0
           Mtruncatula_198 download (m02, text, excel )  (1.0)
   no id type
           Medicago16k download (m02, text, excel )  (1.0)
Micromonas pusilla CCMP1545
   Phytozome v9.0
           MpusillaCCMP1545_228 download (m02, text, excel )  (1.0)
Mimulus guttatus
   Phytozome v9.0
           Mguttatus_140 download (m02, text, excel )  (1.0)
Musa acuminata
   EnsemblPlants 44
           X4.2 musa_acuminata download (m02, text, excel )  (X4_R2.0)
Nicotiana attenuata
   EnsemblPlants 44
           X4.2 nicotiana_attenuata download (m02, text, excel )  (X4_R2.0)
Nicotiana tabacum
   AGILENT
           Ntob_AGILENT44K_mapping download (m02, text, excel )  (1.0)
Oryza barthii
   EnsemblPlants 44
           X4.2 oryza_barthii download (m02, text, excel )  (X4_R2.0)
Oryza brachyantha
   EnsemblPlants 44
           X4.2 oryza_brachyantha download (m02, text, excel )  (X4_R2.0)
Oryza glaberrima
   EnsemblPlants 44
           X4.2 oryza_glaberrima download (m02, text, excel )  (X4_R2.0)
Oryza glumipatula
   EnsemblPlants 44
           X4.2 oryza_glumipatula download (m02, text, excel )  (X4_R2.0)
Oryza longistaminata
   EnsemblPlants 44
           X4.2 oryza_longistaminata download (m02, text, excel )  (X4_R2.0)
Oryza meridionalis
   EnsemblPlants 44
           X4.2 oryza_meridionalis download (m02, text, excel )  (X4_R2.0)
Oryza nivara
   EnsemblPlants 44
           X4.2 oryza_nivara download (m02, text, excel )  (X4_R2.0)
Oryza punctata
   EnsemblPlants 44
           X4.2 oryza_punctata download (m02, text, excel )  (X4_R2.0)
Oryza rufipogon
   EnsemblPlants 44
           X4.2 oryza_rufipogon download (m02, text, excel )  (X4_R2.0)
Oryza sativa Indica
   EnsemblPlants 44
           X4.2 oryza_indica download (m02, text, excel )  (X4_R2.0)
Oryza sativa Japonica Group
   Affymetrix
           Osa_AFFY_150909 download (m02, text, excel )  (1.0)
   EnsemblPlants 44
           X4.2 oryza_sativa download (m02, text, excel )  (X4_R2.0)
   MSU_v7
           Osa_MSU_v7 download (m02, text, excel )  (1.0)
   OSGI
           OSGI.release_19.mapping download (m02, text, excel )  (1.0)
   Phytozome v9.0
           Osativa_204 download (m02, text, excel )  (1.0)
   RAPDB-IRGSP1.0
           Osa_RAPDB_mapping download (m02, text, excel )  (1.0)
   no id type
           Rice_japonica_automatic_mapping08 download (m02, text, excel )  (08)
           Rice_japonica_mapping_merged_08 download (m02, text, excel )  (1.0)
           Rice_japonica_manual_mapping08 download (m02, text, excel )  (08)
Ostreococcus lucimarinus
   EnsemblPlants 44
           X4.2 ostreococcus_lucimarinus download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Olucimarinus_231 download (m02, text, excel )  (1.0)
Panicum hallii var. Filipes
   EnsemblPlants 44
           X4.2 panicum_hallii_fil2 download (m02, text, excel )  (X4_R2.0)
Panicum hallii var. Hallii
   EnsemblPlants 44
           X4.2 panicum_hallii_hal2 download (m02, text, excel )  (X4_R2.0)
Panicum virgatum
   Affymetrix
           Pvi_cDNAa520831.mapping download (m02, text, excel )  (1.0)
Phaseolus vulgaris
   EnsemblPlants 44
           X4.2 phaseolus_vulgaris download (m02, text, excel )  (X4_R2.0)
   genome_release
           Phaseolus vulgaris v1.0 (Common bean) download (m02, text, excel )  (1.0)
Physcomitrella patens
   EnsemblPlants 44
           X4.2 physcomitrella_patens download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Ppatens_152 download (m02, text, excel )  (1.0)
Populus trichocarpa
   Affymetrix
           Ptrich_AFFY_09 download (m02, text, excel )  (1.0)
   Araport11
           X4.2 populus_trichocarpa download (m02, text, excel )  (X4_R2.0)
   JGIv1.1
           Ptr_JGI1_1_0309 download (m02, text, excel )  (1.0)
   Phytozome v9.0
           Ptrichocarpa_v3.0_210_peptide download (m02, text, excel )  (1.0)
Prunus persica
   EnsemblPlants 44
           X4.2 prunus_persica download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Ppersica_139 download (m02, text, excel )  (1.0)
Ricinus communis
   Phytozome v9.0
           Rcommunis_119 download (m02, text, excel )  (1.0)
Saccharum officinarum
   Affymetrix
           Soff_AFFY_09 download (m02, text, excel )  (1.0)
Selaginella moellendorffii
   EnsemblPlants 44
           X4.2 selaginella_moellendorffii download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Smoellendorffii_91 download (m02, text, excel )  (1.0)
Setaria italica
   EnsemblPlants 44
           X4.2 setaria_italica download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Sitalica_164 download (m02, text, excel )  (1.0)
Solanum lycopersicum
   Affymetrix
           Slyc_AFFY_SGN_BUILD2_070709 download (m02, text, excel )  (1.1)
   AGILENT
           Slyc_AGILENT44k_SGN_BUILD2 download (m02, text, excel )  (1.0)
   EnsemblPlants 44
           X4.2 solanum_lycopersicum download (m02, text, excel )  (X4_R2.0)
   ITAG2.3
           Slyc_ITAG2.3 download (m02, text, excel )  (1.1)
   SGN
           SGN_UnigeneR2_commodity download (m02, text, excel )  (1.0)
           Ses_SGNR200607 download (m02, text, excel )  (31-05-2007)
           Slyc_SGN_BUILD2_070709 download (m02, text, excel )  (1.1)
   no id type
           Ses_EUTOM1 download (m02, text, excel )  (Nov08)
           Ses_TOM1 download (m02, text, excel )  (Sep06)
           Ses_Unigene download (m02, text, excel )  (Sep06)
           Ses_TOM2 download (m02, text, excel )  (May07)
Solanum tuberosum
   EnsemblPlants 44
           X4.2 solanum_tuberosum download (m02, text, excel )  (X4_R2.0)
   genome_release
           Stub_PGSC_DM_v3.4 download (m02, text, excel )  (1.0)
   Phytozome v9.0
           Stuberosum_206 download (m02, text, excel )  (1.0)
   SGN
           Stub_SGN_UNIGENES_0609 download (m02, text, excel )  (1.0)
   no id type
           Stu_TIGR download (m02, text, excel )  (August07)
           Potato_POCI download (m02, text, excel )  (Sep08)
Sorghum bicolor
   EnsemblPlants 44
           X4.2 sorghum_bicolor download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Sbicolor_79 download (m02, text, excel )  (1.0)
Thellungiella halophila
   Phytozome v9.0
           Thalophila_173 download (m02, text, excel )  (1.0)
Thellungiella salsuginea
   AGILENT
           Thels_AGILENT44k download (m02, text, excel )  (1.0)
Theobroma cacao
   EnsemblPlants 44
           X4.2 theobroma_cacao download (m02, text, excel )  (X4_R2.0)
   Phytozome v9.0
           Tcacao_233 download (m02, text, excel )  (1.0)
Trifolium pratense
   EnsemblPlants 44
           X4.2 trifolium_pratense download (m02, text, excel )  (X4_R2.0)
Triticum aestivum
   Affymetrix
           Taes_AFFY_0709 download (m02, text, excel )  (1.0)
   DFCI wheat gene index
           Taes_TAGI_release_12 download (m02, text, excel )  (1.0)
   EnsemblPlants 44
           X4.2 triticum_aestivum download (m02, text, excel )  (X4_R2.0)
   genome_release
           IWGSP_MIPSv2.2 download (m02, text, excel )  (2.2)
Triticum dicoccoides
   EnsemblPlants 44
           X4.2 triticum_dicoccoides download (m02, text, excel )  (X4_R2.0)
Triticum urartu
   EnsemblPlants 44
           X4.2 triticum_urartu download (m02, text, excel )  (X4_R2.0)
Vigna angularis
   EnsemblPlants 44
           X4.2 vigna_angularis download (m02, text, excel )  (X4_R2.0)
Vigna radiata
   EnsemblPlants 44
           X4.2 vigna_radiata download (m02, text, excel )  (X4_R2.0)
Vitis vinifera
   Affymetrix
           Vvin_AFFY_09 download (m02, text, excel )  (0.2)
   EnsemblPlants 44
           X4.2 vitis_vinifera download (m02, text, excel )  (X4_R2.0)
   OPERON
           Vvi_VVGIv5_OPERON_09 download (m02, text, excel )  (1.0)
   Phytozome v9.0
           Vvinifera_145 download (m02, text, excel )  (1.0)
   VvGI version 5
           Vvi_VVGIv5_09 download (m02, text, excel )  (1.0)
Volvox carteri
   Phytozome v9.0
           Vcarteri_199 download (m02, text, excel )  (1.0)
Zea mays
   Affymetrix
           Zma_AFFY_chromosomal_locations download (m02, text, excel )  (1.1)
   AGILENT
           ZM_AGILENT_TARGETS_0509 download (m02, text, excel )  (1.0)
           Zm_AGILENT_PROBES_0509 download (m02, text, excel )  (1.0)
   EnsemblPlants 44
           X4.2 zea_mays download (m02, text, excel )  (X4_R2.0)
   genome_release
           Zm_GENOME_RELEASE_09 download (m02, text, excel )  (1.0)
           Zm_B73_5b_FGS_cds_2012 download (m02, text, excel )  (1.1)
   Phytozome v9.0
           Zmays_181 download (m02, text, excel )  (1.0)
   no id type
           ZMGI.060509 download (m02, text, excel )  (1.0)
undefined species
   no id type
           BIN2EC download (m02, text, excel )  (1.0)
           R_mapping download (m02, text, excel )  (1.0)
           ChlorPlast_customarray download (m02, text, excel )  (1)
           BIN2GO download (m02, text, excel )  (1.0)

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IF you use X4 annotations please make sure to only use these with pathways staring with the label X4.

You can keep using your installed MapMan version, if you have trouble updating please contact us either on the forum here or  by using mapmanserver--googlemail.com or personally at usadel--bio1.rwth-aachen.de and m.bolger--fz-juelich.de (replace -- by @).

All Mapping Files are now distributed under a CC license (simply cite us) and are available from our github account as well.

 

We have added any land plant and many algae genome support via our Mercator service. If you have a non model species simple visit https://plabipd.de/portal/mercator4 and submit a FASTA file with all protein sequences. You will get a MapMan X4 compliant annotation usually within 30 mins. From within MapMan make sure to download the mapping files starting with X4. This is a silent update ony pertaining to the ontology and maps and was the result of several man years of work. It represents a complete overhaul of the ontology and has resulted in an ontology with about twice as many terms as before offereing a much advanced resolution.

 

If you prefer the old ontology you can use

https://plabipd.de/portal/mercator-sequence-annotation. This is a bit slower and less precise.

Within our de.NBI efforts we will update the ontology for all plants through Mercator approximately every 6 months.

Here are the installables for the most recent version of MapMan.

For more information please refer to the PageMan application page.

If you have questions regarding MapMan don't hesitate to use our forum.

 

   Thanks for working with MapMan, your MapMan Team.

           

 

 

Version 3.6.0RC1 (19.06.2013 RELEASE CANDIDATE)

  • New detail view on multiple data diagrams (right click, show details, show multiple graphs). Credits go to Elijah Myers of Virginia Tech
  • New type of installers which need Java to be installed
  • The search for publications concerning a given gene has been updated to use NCBI EUtils
  • Small changes to the data filter interface
  • Someusability enhancements
  • See installation instructions

Version 3.5.1 (19.11.2010) download

  • Small BUGFIX release
  • BUGFIX: alignment options when editing pathways where blocked
  • BUGFIX: VennDIagramm4 misinterpretation of data due to typo
  • SMALL FEATURE: enabled data blocks to be displayed larger
  • SMALL FEATURE: Venn diagramms now have the sets names displayed

Version 3.5.0 (26.05.2010) download

  • PageMan Integration
  • More image exports
  • Easier data export
  • More mouse over informational displays

Version 3.1.1 (4.02.2010) download

  • BUGFIXES: drag n drop of between pathway and cluster fixed
  • ENHANCEMENT: locus 2 publications initialization monitored
  • BUGFIX:interactive popup reshow problems fixed
  • Venn diagram visualization
  • Requests related publications from TAIR' s agi 2 locus service
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX users
 
 

Version 3.5.1 (19.11.2010) download

  • Small BUGFIX release
  • BUGFIX: alignment options when editing pathways where blocked
  • BUGFIX: VennDIagramm4 misinterpretation of data due to typo
  • SMALL FEATURE: enabled data blocks to be displayed larger
  • SMALL FEATURE: Venn diagramms now have the sets names displayed

Version 3.5.0 (26.05.2010) download

  • PageMan Integration
  • More image exports
  • Easier data export
  • More Mouse over informational displays

Version 3.1.1 (4.02.2010) download

  • BUGFIXES: drag n drop of between pathway and cluster fixed
  • ENHANCEMENT: locus 2 publications initialization monitored
  • BUGFIX:interactive popup reshow problems fixed
  • Venn diagram visualization
  • Requests related publications from TAIR' s agi 2 locus service
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX user

Version 3.1.1 (4.02.2010) download

  • BUGFIXES: drag n drop of between pathway and cluster fixed
  • ENHANCEMENT: locus 2 publications initialization monitored
  • BUGFIX:interactive popup reshow problems fixed
  • Venn diagram visualization
  • Requests related publications from TAIR' s agi 2 locus service
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX user

Version 3.1.0 (29.01.2010) download

  • New Features: Venn diagram visualization
  • Requests related publications
  • New Interactive mouse overs for ease of use and additional information
  • Java 1.5 compliant for MacOSX users

Version 3.0.0 (17.06.2009) download

  • New Features: includes mapping multiple data sets onto one pathway
  • New exportable table based displays of mapped data for pathway visualization
  • Many usability enhancements and the usual bug fixes
  • Fixed MS Windows Vista Problems

Version 2.2.0 (08.07.2008) download

  • New Features: includes data mapping onto chromosomal maps
  • New Features: a simplified first user interface
  • revised error messages in the case of user errors
  • fixes the most prominent missing deleted files bug and many others

Version 2.1.1 (12.09.2007) download

  • New Features: includes clustering visualization
  • better integrated proxy support
  • usability enhancements and bug fixes

Version 2.0.0 (23.09.2006)

  • support to filter by derived data, p-values or others
  • new edit mode for annotating pathways (alignment functions, multiple move, ..)
  • multiple links to public databases ( TAIR, GabiD )
  • new export data features
  • TAIR6 support
  • enhanced user interfaces

Version 1.8.1 (23.06.2006)

  • drag, drop and copy for mappings and pathways
  • multiple colour schemes
  • pathway icon preview
  • enhanced user interfaces
  • enhanced data export features

Version 1.8.0 (30.01.2006)

  • Data types can now be represented by different graphical symbols. The "symbols" graphical representation is now default for all which used to be points. If data should be displayed as points only the mode can be overriden from on pathway or on single bin level by switching to the original points interface.
  • Added map after adding or editing annotation areas on the pathway to ensure that previously unknown bins data is mapped.
  • Added last data provider active to allow for new pathways to show the last active data.

Version 1.7.0 (19.12.2005)

  • statistic exportable
  • multiple testing corrections available
  • images can now be exported with given resolution
  • performance enhancements (mappings are now stored in a local database)
  • various bugfixes

Version 1.6.3 (23.09.2005)

  • new pathways and mappings
  • performance enhancements (still ongoing effort)
  • various bugfixes

Version 1.6.0 (08.06.2005)

  • Custom multi format data loading including multi experiment files
  • Color legend
  • Wilcoxon rank sum to rank the bins according to their changes
  • Diverse bugfixes

Version 1.4.3 (01.09.2004)

  • New Feature: with search gene function

Version 1.4.2 (02.06.2004)

  • Integration of MapManStore (up to date Pathways and Mappings can be loaded from remote MapManStore server).
  • Now supports reading of mapping and data files as tab delimited text files.
  • Enhanced Installation routines now checks if software has been updated
  • bugfix: Help window size on MSWindows fixed.
  • bugfix: Error while printing when rescaling image
  • bugfix: Wrong error message displayed when loading double entries in data files
  • Enhanced the image saving routine to autoappend image type extensions if missing

Version 1.4.1 (23.03.2004)

  • New info to clipboard function to copy information from pathway to clipboard.
  • Contains AGI codes in supplied mapping.

Version 1.4.0 (02.03.2004)

  • Major internal revision (essential for new upcoming features), please post bugs on the forum
  • Experiment folders now go into a seperate top level folder.
  • Whole directories can be read as experiments at once.
  • Automatic inclusion of sub bins can be switched off.
  • Visualization mode can be changed for whole pathways to override local settings for single visualization.

Version 1.3.6 (21.01.2004)

  • New Feature: warning appears if installed java version is lower than java 1.4

Version 1.3.5 (21.01.2004)

  • New Feature: keyboard support for moving the annotated dots (klick on the annotated areas, afterwards hold down Alt and press the arrow keys to position)

Version 1.3.4 (01.12.2003)

  • Storing of scaling, datasize and background option individually for each pathway
  • Bug Fix: Display does not update immediately after changing scaling
  • Bug Fix: Popup menus on pathways do not come up correctly if scolling on large images

Version 1.3.3 (26.11.2003)

  • Added dialog if the annotation file cannot be read
  • Added support for opening pathways in the png ang jpg type

Version 1.3.2 (25.11.2003)

  • Storing of scaling, datasize and background option individually for each pathway
  • Bug Fix: Display does not update immediately after changing scaling
  • Bug Fix: Popup menus on pathways do not come up correctly if scolling on large images