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Mapping for Rice MSU Loci

Mapping for Rice MSU Loci
Réponse
12/02/14 13:15
Hi @ all,
i tried to analyze some Affymetrix genechip data but still have some trouble. First of all i used the Rice (US) Gene 1.0 ST Array (901992) for my experiments. I thought i could simply import the Sample IDs with expression value into MapMan using the AffyMetrix- Mapping- file but the IDs are completly different (e.g. 15845389 instead of something like Os.37783.1.S1_a_at). So my second thought was to use the LOC_Osxxgxxxx- identifyer with the MSU- Mapping- file but this still not work either. The MSU- Mappings needs the gene model number (LOC_Os10g38276.1) and i only have Loci- number (e.g. LOC_Os10g38276).
Is it possible to add only a ".1" to all loci- identifyer to get the gene model number or does this modification unrecoverable destroys the sense of my data? Does anybody maybe know a ID- converter for this problem? Is it possible to create a mapping for my fancy AffyMetrix IDs or for the Loci-numbers?

chears Martin

RE: Mapping for Rice MSU Loci
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