Hi,

I've been using Mapman for my Arabidopsis data and now I would love to use it for my barley data. I see that you have the MLOC notation in the barley database. Would it be possible for us to get the annotations based on the new barley genome (2016 May release) to be used for our publication? It would be highly appreciated.

Thanks a lot,
Kind regards,
Shani Amarasinghe,
B.Sc (Hon's) in Bioinformatics, Colombo
PhD Student (Bioinformatics)
Plant Genomics Centre,
School of Agriculture, Food & Wine, Faculty of Sciences,
The University of Adelaide, AUSTRALIA

Hi,

If you provide me with the link to the protein sequences you are using, then I will generate the mapping file and put it on the website.

Regards,
Marie.

Hi Marie,

Have you managed to generate map files of new barley genome? Otherwise, please find the protein data in either IPK webserver (http://webblast.ipk-gatersleben.de/barley_ibsc/downloads/) or EnsEMBL (ftp://ftp.ensemblgenomes.org/pub/plants/release-39/fasta/hordeum_vulgare/pep/):

Download links:
http://webblast.ipk-gatersleben.de/barley_ibsc/downloads/160517_Hv_IBSC_PGSB_r1_proteins_HighConf_REPR_annotation.fasta.gz

http://webblast.ipk-gatersleben.de/barley_ibsc/downloads/160517_Hv_IBSC_PGSB_r1_proteins_LowConf_REPR_annotation.fasta.gz

ftp://ftp.ensemblgenomes.org/pub/plants/release-39/fasta/hordeum_vulgare/pep/Hordeum_vulgare.Hv_IBSC_PGSB_v2.pep.all.fa.gz

Many thanks in advance and look forward to your support,

Hieu