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FATAL exception during Mercator upload

Hi!

I encountered "Error: Sequence Check failed: Found FATAL exception(s) while reading sequence input file!" during data upload with a small test set (see below) on line 16

: FATAL ERROR: Data type of sequence could not be determined.
sequence is:
MEMKWVMTRA....

I cannot quite see what the error is. The 2nd sequence is obviously a fasta formatted protein sequence and it is not of low complexity.

Do I need to reformat the sequence?

Best,
Andrea


>Cg00478
MSENGQHFVEWKEHFVSQERGNRIVHYFLKDLSGESILAVVGTERSVRHM
FYVVSEDFVRVHGAENSIHAGFKWRSRREVVDWLTSMLSKQNLQGNWSKL
PKCDSEESNGSPEVPSNGVTVRQFQATDDKGRLPVNLSVHNWEIVWSGTS
WMCGKQLKHYPSFCRNGTTIKVQSLVFVMGKGEDRYIAYLEDMYEDKRCQ
KKVKVRWFHYTDEVKGAISLKNPNPKEVFITPHSQVISAECVDGLATVLT
QEHYEECVAYLLGRVYMCFRQIRNNKIKPFDLSKLRGYFDQPIMSCLTSA
PLLEADHVMHTLNGEEDEEQTGTKRAKKKPTRRVSDCRKKLKHGGSGEGF
FPSKHACYNGVLKADAKIELLCQDSGIRGCWFRCTVLEVSRKQIRVQYDD
ILDDDGYGNLEEWVPALKFAMPDKLGMRSSNRPTIRPVPVDVSKENSVPT
IGTAVDAWWSDGWWEGVVTEIDNRVTDNLQIYIPGENLFLNIPRKDLRIS
RDWIGDRWVDIESKPEILSIVSAGSPEARVSTSSTLAKDVKPEPNTMLNT
VEEAKPECPKDDSSRNNLQLETNEKKDDRDGTEDDQNHSLKEEDKETEID
DDTLNVETGMKPEVINALSKTTTTTTTLMST
>Cg00479
MEMKWVMTRALTQLFGQSNEMNNECKKKNNEMKIIRRKEDYPNGFQLPLH
YPNYTKSDYENMDELRLDLLLKQYGLSFQGSLVDKRDFAMGSFLWPHQLU
MEMKWVMTRALTQLFGQSNEMNNECKKKNNEMKIIRRKEDYPNGFQLPLH
YPNYTKSDYENMDELRLDLLLKQYGLSFQGSLVDKRDFAMGSFLWPHQL
>Cg00480
MSSDATQKPLLEENLDPMGQDFNRNASRKRRFRRCKSAPRGDFSYNDEIK
HEETPPPLRNLSVFKNLNPSFRHVIMFLALYLSIGAVCFYLVRNQIDGSK
TNGFVDAVYFCIVTMTTVGYGDLVPNSSVSRLLACAFVFTGMVLVGNILS
RAADYLVEKQEALMVKAFHLRQSIGPNDILKEIQTNKSRYKCYVTFLVLV
ILVLIGIIFLVMVEKMAFVDALYCVCSTITTLGYGDKSFSTGAGRVFAVF
WILTSTICLAQFLLYVVELNTETKQRELVKWILTRRITNNDLEAADLDDD
GVVGAAEFIVYKLKEMGKIDQEDISAIMEEFEQLDIDESGTLTTSDIVFA
QSSHFKR
>Cg00481
MDLSVAQTTLYAEEEDEWDTEGFVIPSLELEDKVSDSEIQTSKPPSPTEI
KAEQNIYLGPHGAPPSQREGNPSNRKQRFKQKLKEADQKMSGSGRENKVA
HLRELVGGTGKSTNPNLSKGSSRDWLDPHCHESQFEKRPP
>Cg00482
MVEKADYQKHFPWSCILKPPLLLIVSSFIPFALLFFFRNSHGLIFSALIT
ITVLFISSIVLFLKLPKNKTKVCLAEGSVQEEEEAEMTDLPSDMDSSSGT
VVSEAFDLDWLGSNRMVCNVSSCFDDDYHDGDDDDDDDGLIEIALVNDQH
NQQKLWDDNGEEEINEEENLIEIDISIGSIKRSTVEI
>Cg00483
MGEEDTKSENGTGLQEKPTEALSGKEEETTGSKGIQENKDGEDEPEKMEI
DAEANKGGEKSEAGKIEEVKKDEGQIETPKMEEDTVSKEENVNGDVSAAD
SGGDIMMQENVESGDDNDEREENLENKKTDITQAGDEEEEKELEKDEPKS
EGKNGNGNEEEEKEVDANKEEDAAEEILKVDVNQEDETMDEKVDELKAET
EKEESGDEEDEEEDEKGEIKEEKGSKKTGKGKSTVEKTKSEEEKKDTEPR
TPYSDRPVRERKSVERLVALIDRDSSKEFHVEKGRGTPLKDIPNVAYKVS
RKKGDETFKLLHTILFGRRGKAAQIKTNILQFSGFVWHGNEEKGKLKVKE
KFDKCNKEKLLEFCDVFDIPVAKATTKKEDIITKLIEFLDEPHATTDVPV
YEKEKSSKIAKRKRTTKQSSPTAGSSSSKRSVKSQKKSEKGLKADKKNMS
HSDESEEEEVEEKEEKNEEAGNENGVTDKSEDEVPEPSESEEKVESEEDS
EEDTKKKKSGKKESSGKGRSKKVTVSEKASPPQKVTQKRSSAKRKKTDDD
SESSPKILSKRKKTEKSTTKEQSSARSKSASKEKPGKRSGKGKEKSKEPS
DKELKNAIIEILKKVDFNTATFTDILKLLAKEFEMDLTSRKSSVKMMIQE
ELTKLADEAEEEEEEEEEEEEKGVAEGEKEVKA
>Cg00484
MHRTVILSIFILLISTFALVQADNALAPSHTTSRTKLQSPIISPAKSPQT
PTSHTPPSTPAISPVFSPVTKPVTSPLPTLRSPTSSPVKSRATKPVTPPT
VAVNFHVFASVSSPVASPSPTLQPPTSTSATSLTTTPVSPSTAATRVKSP
VSAPVTSPVASAVPTSQLPTISPVKSLEITPVSPLIAANPMNSTVSVSMT
SPAASPPPISHPHAATPTKSTAATPVSPPTVSTRAKSHVSASVTSLVTLA
TPISQQKVATPAKSPVATPFSPPIVVTPVKSPISAPLKTPTASPPPTSQL
PAKTPAKSLL
>Cg00485
MAEIRGVGCACRGFSGGSLFYSGGFTVESCFFEQRTRRTRDFFRNVSMIP
PFKRGRFFSKCRSISGNSRIFSMDAREKSRSPVSISSRHTRVPVFVMMPV
DTFGLDASGCVRIKRIKALTVSLKALKLAGVHGIAVEVWWGIVERCCPFE
YKWSLYEELFRLISETGLKLHVSLCFHSNMHLFGGKGGISLPLWIREIGD
LDKDIYYRDKSGFSNSDYLTLGVDQLPLFCGRTALQCYEDFMVSFSSKFK
QLFGSVIEEVSIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCYDKYMMED
LKVVASQEGKPQWGEQGPQNAGCYNSFPHGVPFFEEGHDSFLSDYGCFFL
EWYSGKLICHADAILAKAANIFRRCQEEEEKSPVMLVAKIGGIYWWYQTI
SHPAELTAGYYNTSLRDGYDLVASVLSRHGAALHVPCLDMTDSEIPPTYL
CSPEGLLRQIHNVTKKRTIYLTGRNTNERFDQMGLQQIHANCFQPNGDAV
RSFTYFRMNEKIFRVENWNNFVPFIRQMSADM
>Cg00486
MLESSTCRTGNPIDDCWRCDDKWESNRKKLADCAVGFGRNAVGGRDGDIY
VVDNSSDDPFDPVPGTLRYGVIQERPLWIIFDGDMVIRLKEDLQLTSYKS
IDGRGHNVQIAFGPCIMMYKVSNIIISNIYIHDCLPARRYTLGGYSDGDG
ISIFQSRDIWIDHCTLERCYDGLIDAVNGSTAITISNNYMLHHNEVMLLG
HSDKFLADRNMRVTIAFNYFGEGLIQRIPRCRHGYFHILNNIYKGWDAIG
IGGSANPTIYSQGNVFMASDDRSLKEVTKRESTSGYEDWKNWNWKSDGDL
MLNGAFFTPSGEEDSSSYLRVSSMVARPVSLLSTIHPSIGALSCHIGQSC
>Cg00487
MVAMAKKTSEALFSLILTLSILFSGETQAHNVTRLLAKHPSFSTFNHYLS
QTHLADEINRRTTITVCAVDNAAMSDIISKGYTISTIKNILSLHVLLDYF
GTKKLHQIRDGSALAATLFQATGAAPGTSGFVNITDLRGGKVGFGPDGGD
LSAFFVKSLEEVPYNISVVQISKVLPSDVASAPTPAPAEMNLTGIMSGHG
CKVFAETLLANPGASKIYQESVEGGMTVFCPGDEAMKGFMPKYKNLTAPN
KEAFLEFLAVPTYYSMPMLKSNNGPMNTLATDGANKFELTVQNDGEDVTL
KTRIDTVKIIDTLIDEQPLAIYATDKVLLPKELFKAVEAPTPAPAPAPEE
EAADSPKAAKGKGKGKKKKAAPSPDSFDDSDAPADSPEDDPADQTADDAG
GRITGGVKVGFVMSLLCLCISWLL
>Cg00488
MSEHKYPPVSACENGEDFVDVLPSVDDDHGGVIVEIKTTMDPDSFVLALR
SSIEQWRLIGEEIFVATVREVKEETGIETVFQEVLAFRQTHESFFVKSDI
LFICLSRPITFDIQKQELEIAAV
>Cg00489
MERGAGLPRYHHHHHHPKPASGLNLDQQEEPKHGGENDNMIPPQICMVRE
QDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFVTGEANER
CQREQRKTITAEDVLWAMGKLGFDDYVEPLTLFLTRYRECESDRGSLRGE
PQYKPTGFHGTGNINPQVPVAQPFGYGMFDPSMMVSGYYQNGSGQGGTAG
GSSSSMGGMPVYDPYGQYK
>Cg00490
MFTGMENPSEKMTSTSTATMENLLLQIFERKRWIVEQVKQQIDLYDQHLA
SKCILDGVTPPPWLWSPSFPSQTSDLNKEEIISGLLFPHSRTSNIYSSNR
RYSYQQPVNYFVDNVKSLELNQPLEKQLLEEDQQHDLSPKNLKDGEGVSY
SAYEQDPNIASARDFQEEIIPESASVSCKQNLSGLFPENLQNNTVEKNGV
ATSLDVISPGYSHKGRVPKGDSTTRCEQESRNTSPRYCLQEAEPDTCLDP
ALSLVRIQRSKSRQRALELRSSAKASKSRSGNKSDLKASSAENLGFEIAS
LRSDNVEEIELFEHDENDKGGCRKAVEKSIFQGKEGNCFFTTPKSTSPCQ
KVDSATKSSSMDKHASVAPDSGGPNSLFETGLVNEMALSQPTKTANEVST
NEERKVIDSQSKRCSDIVHLQGSKSLTEEFSSKNEKTKLSISCSDELLPR
RSNASPRTGQEIELPQSTSTNYEASAQREAGKSNSQSQKMYSGRVTRSRS
TAQGCRSKTEHLGNADSSSVDLESRHSVFPQCDDETKLLKPTTVSGEGLV
VEDNVKDKGLEEKGIDTSIISRSKSLSLTDILVDERTEMGDIQDCKIKSE
HLGYVESSSVEMQSRHTVSVLQYGHTKELSELTTANEKCLLVELDYTGDK
PCKEKGESTRTSRTSTSRSLDETDISMHEPAVVGESVQDVSCGFKVTQPY
SLWTKAEITQPHGTVSRSPSRQKELAEEYEALSVSFEHASEQLDVGAVNS
PLNTVHNLPANVKHEPLHFDDNEEQNFYRTQINLHSESDNGAFLIPAAEE
KDIDVASSTGLEVNLLVENNLSAIVEQAGIQQERISVRESLMGDAELKAG
ESEPSEANNGLSVNNIPNVSVDALEKSLKRRLSLSVPNHLSDNSAELQAP
EIASLCEMSKEPLVSCLSNLSVNEEKKLSFEEDICQLDVFKHALSTSSKR
SEEKTNTEDHEVELKVKLSVGELNQSGSSDIQAPETTIQALCQSSSNIES
SNLVNKRRRTLDSLCLGMPSSASLADDIDPGTIGEKLGTVDHGVECFSHY
DVELQKMIGSASSTELRLDEAYLLNEAGLKSPATVTFKAEHLNQQGSQAI
PNHGVESNNTDIVPYARETIHLLDSRVVRDSISTPHVLPIGLVSSDDRSL
PELEGFIIQTDDENQAGSRDQINLDSLQLPKSTVERASVLEQICWSACRS
TPSLHLSTSFKFDGKPNLNQSVPNRLLSTKDDESKKLEDGADFVNFGIEH
AFHERSYSDCLPVSGAGSSTESRKILASPIGKSWYRSMQKSTSSEKRGSL
SPDLPCITEENENVDESTDKLWSENTPKSSSSEKQGCSSPDLPCIAEENE
NSDEAFEALHEANYSAMKNESAERKPLVNVDENIEFSAAVSDAKMLVDRQ
SLDSVNTAFSFTSTCNSVKSKMGKQNGGKRRFTGKGKENRGISRGTAAAR
NIDSLRSSKPKLSGYSSLTIQGPRLSEKEAKHNNIVSNITSFIPLVQQPK
PASELITGKRDVKVKALEAAEAAKRLAELKDNERKMKMEALKLERARQEQ
ENQKKQEVEKQKKEERKRKEAEIAERKRQKEEEDKRLKEEERKKKEAEMA
ERRRQREEEKKLKEEERKKKEAEMAERKRQREEEEKKLKDAKRKRMAVTH
MQHPKLLAEKESKAQATDVSTKPQKELIEEPGNTVKTVKEQANSSASTKS
NVSEDSSKMISNSGEVSNGTNYATETIEESYDISPYKCSDDEDEDENEDE
IVRNTKFVPAWASKNCVLLSVSSQQNVDPEKIFPSKSFCSIGEVLLPRRL
QSR
>Cg00491
MSLTVLFFLWMVLSMAKPESVDFTFESFTIRNLTFLGDSHLRNGVVGLTR
ELGVPSSSSGSVIYNAPLRFHDPDSNTTASFSTHFSFSIQNLNPSSSGDG
LAFFISPENQTLGSPGGYLGLVNSSQPMKNRFVAIEFDTKMDTHFNDSSD
NHVGFDVDSLNSIATVDPAVSSGFDLKSGKWFTAWIDYKNDLHVLNVFLD
YSDAEKPEKPLLSMNFDLSPFLKDEMYVGFSGSTEGSTEVHLIKNWSFLT
SGYVPLRPKSHPHNVSDSCMKPEIPISGSTGNHHRNLGIAFGISGPIFFF
LALSVFGYVSLKKWKGMKKEMKTDLIAGPKEFSYRELYKSTKGFHSSRVI
GRGAFGNVYKAVFVSSGMTSAVKRSRHSHEGKTEFLAELTIIACLRHKNL
VQLQGWCSEKDELLLVYEFMPFGSLDKILYQESETGAVSLNWSHRLNIAI
GLASALSYLHHECEQQVIHRDIKTSNIMLDANFNPRLGFDMEKSIHTILT
IDRWDSLNHMDYKQARLRPVHGRLALKLLNWAVKQPGLELNHLVNLFSIT
THILVRARMYEPAKHILRELSQMGTESGSVFGALMTTYRLCNSNPSVFDL
LIRVYVKEGMIEESLKIFRLMGHYGFNPSVYTCNAMLGSMVKRVEAESVS
FLLKEMLGRKICPNVATFNILINVLCAEGRFKKACYLMQKMEDSGFSPTA
LTYNTVLNWYCKKGRYKAAMELIDQMGSKGVEADVCTYNMLIDDLCRNNR
SGKGYLLLRKMRKRMIYPNGVTYNTLINGFAKEGKVGIARQLLDEMLAFG
ISANQVTYNALIDGYSSQGDFKDALKIFDIMEAQGLKPTEVSYGVLLDGL
CKHAEFKLARGLYMKMRRDGMLVGRITYTGMIDGLCKNGLLEEAVEMLNE
MGKEGIHPDIITYSALINGFCIVGRIGTAKEIICKIYRDGLTPNSIIYST
MIYNCCRMGNSGEALRIYAAMLSEGCKADHFTCNVLVNSLCKAGKVEEAE
GFMHHMRSVGVVPNTVTFDCVMNGYGSLGEGLKAFSLFDEMTKLGHHPTF
FTYGSLLKGLCRGGHLREAEKFLRSLHNIPSAVDTVMYNTILAEMCKLGN
LQKAVSLFGEMVQQSILPDSYTYTILTSGLCKKGKTVIAILFAEKAVARG
LLLPNHVMYTCLLDSMFKTGMYKAGLYFLDQMKENGLSLDTVASNAVIDI
YSRRGKMEKAIDLFSEMASQNLYPNLITHNILLHGYSKKKDISASFMLYR
SMISNGISPDRVTCHSLILGLCESGLLDIGVKMLKALVSRGIKVDRYTLN
MIISKCCINGKISKAFDLVNVMMLLAISPDENTFGAIVTGLTRNHWFQES
RVILHKMLENGYVPELTRYTSLLNGLCRVGDLKNAIELRDEMIALKICTD
NVAESALVRALAKCGKTEEAMLVLQSMLKKNLIPTITSLTTLLHMFFKND
DVTEALKLRDVMYKHKVKFDVVVYNVLISGLCAKGDLEAAFELYEEMKRD
GFLANVTTYKALVNAFLSRGIVSVKIDIILKDILERGFIHPSNLSHESHE
NLTMAMKKLKALQRKKKP
>Cg00492
MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPGKATE
SHVKPGADHPNKPPPKKWLCCVQSPTVDS
>Cg00493
MGSSKGEVDTSAPFQSVKDAVTLFGESVHSGEKPFIRKVNPQSAERVLAK
ESQLHLAQKELNKLKEQLQNAETTKEEALIELEKAKRTVFDLTSKLKVVN
QSKDSAIKLTEEAKCQAKAKSVSVYPSNDARKQDIDNVIEQYGTVLNELD
MAKQELSKIRQDSNEIFVSKIVALNTIDEAKKVVEANSEKIKELKKEILV
VNESVEQMKLSCLQVQKEKAQIFTEKDIQRQLYKAKMEELAKKLLDLNNG
FDPQLVKKLELQLAETYNEIDSLQNQIENAKALDMGSMKSVTMELDDAKE
SIKKLVEEEKSLQELVESLKIELENVKKEHFEVKAKEAETESMAGNLHLK
LRKSKTELEACVAEESKTKAAYEEMMSTLNQLSLETDIARKESEEMRIKA
KELRKEAEVANVAFEDAELNLKVAIDEVEEAKAAETRAVEQIKFMSEKTN
ITRTSTSESDAQITMSREEFESLSRKVKESDKLAEMKVAAALAQVKAVRA
SENEALKKLEMTLNEIEGLKAATQEAMKKTEMAEAAKRAVEGELKRWRER
EQKKAAEAASNESSSPYHNEIMKQKPIERRVEIRKLEKTKTSVISKKVLL
PNLSEVFHRKKNQFEGGSPSHLLSGEKPF

RE: FATAL exception during Mercator upload
Answer
5/29/14 5:54 PM as a reply to Andrea Braeutigam.
Hi

the problem was this sequence bit
FLWPHQLU

as the U would choke Interpro later on, we are quite conservative here. We will introduce better error messages though in an update

björn