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Using MapMan

Custom Pathways

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Custom Pathways
mapman custom pathway rna seq data pathways
Answer
4/30/14 5:14 PM
Hello,

I am fairly new to mapman, and I am looking to create custom pathways to map lipid-related data.
I have tried looking through the forum to see if this has already been answered, but I have not had much luck.
I would like to create custom pathways similar to those explored on Aralip:
http://aralip.plantbiology.msu.edu/pathways/pathways
to investigate differentially expressed genes from a RNA-Seq experiment. The help manual on my mapman for creating custom pathways seems to be outdated with respect to the version ( mapman 3.5.1R2, help manual 3.0.0). Most of the instructions here do not correspond to anything I can find on my mapman... I'm not sure if this is because I am using a Mac instead of Windows.

If you could please give me some guidance on how to build a pathway within mapman, I would appreciate it greatly.

Thank You,
Meghan

RE: Custom Pathways
Answer
5/20/14 11:02 AM as a reply to Meghan Rains.
Hi Meghan

sorry for my late reply, I have been travelling quite a lot lately.
If you download the ultimate MapMan guide (pdf) from the download site you can find how to do it on page ~60ff.

If you need any more help please pm me usadelATbio1.rwth-aachen.de. Also if you want to share the pathway with the community let us know please.

Bjrön