Welcome to the MapMan Family of Software Forum

Please do not hesitate to register and post your question.

Don't forget to subscribe to your posted message so you get notified on updates.
Every question you post will help others and or enhance the software!

Post a question,   post a bug!

Welcome to the MapMen Family of Software Forum Welcome to the MapMen Family of Software Forum

Using MapMan

an error of RobiNA new start

an error of RobiNA new start
Answer
2/15/13 1:17 AM
Hello, when I start the RobiNA 1.2.3_build 559 at the first time, I meet with a error warning as follows:

Loading required package:BiocGenerics

Loading package:'BiocGenerics'

The following object(s) are masked from 'package:stats':

xtabs

The following object(s) are masked from 'package:base':

anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find,
get, intersect, lapply, Map, mapply, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, Position, rbind, Reduce, rep.int,
rownames, sapply, setdiff, table, tapply, union, unique

Loading required package:Biobase
Welcome to Bioconductor

Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package:BiocInstaller
BiocInstaller version 1.4.7, ?biocLite for help
Error: the following are not valid files:
D:/microarray data mannitol/shoot/CEL files/OSMOTIC_1H_SHOOT_REP1.cel


I just know little of the program, maybe I do something wrong?
Thanks a lot

RE: an error of RobiNA new start
Answer
2/15/13 12:28 PM as a reply to Jin Huang.
Hi Jin Huang,

according to the error message you've attached, one of your input CEL files,
namely the file "OSMOTIC_1H_SHOOT_REP1.cel" seems to be corrupted in
some way and hence could not be read. The error message sais that it's not
a "valid file". Maybe try to obtain the file again or retrieve it from some earlier
backup (maybe you have it on a CD?) and then try rerunning RobiNA.

Files can get corrupted when they are copied or transferred via the internet
although this rarely happens it's unfortunately not impossible.

I fear this is all the help i can give you at the moment - i hope you can
solve the problem.

cheers,
Marc