Welcome to the MapMan Family of Software Forum

Please do not hesitate to register and post your question.

Don't forget to subscribe to your posted message so you get notified on updates.
Every question you post will help others and or enhance the software!

Post a question, post a bug!

Welcome to the MapMen Family of Software Forum Welcome to the MapMen Family of Software Forum

Using MapMan

Request mapping of Tomato gene ID annotated from genome

RSS (Opens New Window)

Soon-ju Park Rank: Youngling Posts: 2 Join Date: 1/26/11 Recent Posts	Request mapping of Tomato gene ID annotated from genome Answer 1/26/11 2:00 AM Hi, I would like to do mapping using new tomato annotation from genome for analyzing tomato mRNAseq result. The annotation file is too big for using Mercator on the Web. Can I please get a help to do mapping gene ID annotated? Thanks, Soon-ju
	Top

Marc Lohse Rank: Jedi Master Posts: 271 Join Date: 6/30/09 Recent Posts	RE: Request mapping of Tomato gene ID annotated from genome Answer 1/26/11 10:21 AM as a reply to Soon-ju Park. Hi Soon-ju, and thanks for your interest in using MapMan. Could you please let me know exactly which annotation you are talking about (and maybe provide a link to the publicly available file)? Thanks, Marc
	Top

Soon-ju Park

Rank: Youngling

Posts: 2

Join Date: 1/26/11

Recent Posts

RE: Request mapping of Tomato gene ID annotated from genome

1/31/11 3:07 PM as a reply to Marc Lohse.

Hi Marc,

I am sorry for late reply.
The link of tomato annotation is here.
http://solgenomics.net/itag/release/2/list_files
I think ITAG2_cds or cdna will be best one for mapping.
Those are recently released.

This file size is too big to do mapping on the web.
Please let me know it could get a help from you.

Is there any special tool or way by using for analizing mRNA seq data?

Thanks a lot,

Soon-ju

Björn Usadel Rank: Jedi Knight Posts: 200 Join Date: 7/1/09 Recent Posts	RE: Request mapping of Tomato gene ID annotated from genome Answer 1/31/11 3:12 PM as a reply to Soon-ju Park. Dear Soon-Ju we will probably still have to wait until the embargo is lifted. (i.e. the genome paper is published) I might check this with Joyce though. Best Wishes, Björn
	Top

Justin Lashbrooke Rank: Youngling Posts: 1 Join Date: 2/4/13 Recent Posts	RE: Request mapping of Tomato gene ID annotated from genome Answer 2/5/13 2:59 PM as a reply to Björn Usadel. Hi, Is the tomato Mapping file available? Thanks, Justin
	Top