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Affy vs. AGI mappings

Affy vs. AGI mappings
Answer
8/26/08 9:24 PM
Is there a sample data set available that uses the AGI mapping instead of the Affy mapping. It seems that all the downloads are set up to use the Affy mapping.

I have a data set coded with AGI identifiers and expression values. I cannot get the TAIR Gene code mapping to recognize my data and show me expression levels on the metabolic pathway figures.

Do the data sets have to contain all the TAIR AGI numbers even if there is no data for them or can you use just a partial list?

Re: Affy vs. AGI mappings
Answer
8/27/08 9:17 AM as a reply to michael wisniewski.
Hi,

a partial list is fine.
Thre are currently two main causes fort it not to work:
-case sensitivity
-the agi mapping is using the locus id without the .1 or .2


Best Wishes,
Björn