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how to define gene supset with filter?

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how to define gene supset with filter?
arabidopsis affymetrics data set mapman iput data
Answer
11/25/15 4:34 PM
Hi again,

as established in the thread "whole genome data or specific gene list?" I cannot just enter the genes of interest. I have to give mapman the whole genome.

But.

I still do not get it.

I want to use the filter to define a speciell set of genes and want to see if those genes are enriched in some BINs.

I used column 4 for the log2foldchange and column 5 (derived value col 4) that contains 0 and 1.

1 for the genes I am specially interested in
and 0 for the rest

Than I set the filter to "=1"

despite what "supset" of genes I try to select this way the ORA Fisher test shows the same result.

What do I do (or think) wrong?