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DEGs from DESeq2 output in Arabidopsis

Aiheet [ Edellinen | Seuraava ]
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DEGs from DESeq2 output in Arabidopsis
degs from deseq2 in arabidopsis
Vastaus
7.4.2014 17:48
Hej,

I got a list of differentially expressed genes from DESEq2 package from R and I would like to see what are the pathways which are affected in my treatment (both upregulated and downregulated genes). I don't know which values would I use as input for mapman. The plant which I am working with is Arabidopsis thaliana. I am not sure what shoul I use as a reference file (which can be used for such type of analysis?)

Thank you for your help,

Paulina