I am using the Mapman to visulize the expression patterns of my RNA-seq on Brassica rapa. however, the data cannot be mapped using the available file Brapa_197 because the IDENTIFIERs of my data are different than the mapping file. In my data, the IDENTIFIER is simply gene ID such as bra028418. But in the mapping file Brapa_197, the IDENTIFIER is bra028418|pacid:22690850. Anyone could propose a solution to fix this issue? I tried to use mercator to generate a mapping files with my own Brassica rapa full CDS sequence file but it is too large for the web-based tool.

Any suggestions/comments are appreciated.

Tao

Dear Tao,
I just saw your question and i'am interested to know if you found an aswer, cause I am having the same problem now with another plant!
Thanks.
Arwa.

Hi Arwa,

If your dataset is too large to run, you can send it to me at
m.bolgerfz-juelich.de

Regards,
Marie.