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cassava RNA-Seq

Aiheet [ Edellinen | Seuraava ]
RSS (avautuu uuteen ikkunaan)
cassava RNA-Seq
Vastaus
18.1.2014 12:26
Hi All,
Now I try to analysis cassava RNA-Seq data with Mapman, but I cannot get the output, mapping data showed that 0 matched out 22312 data points.
I have downloaded manihot esculenta/M esculenta_147 from Mapmanstore, and have choosen it as map when I run the pathway,
I am not sure that I did something wrong.

My input file (.xls) look like this
cassava.id X10CK_FPKM X10PB_FPKM
cassava4.1_000001m.g 12.1342 13.502
cassava4.1_000003m.g 17.9007 18.7428
cassava4.1_000005m.g 15.9009 15.8803
cassava4.1_000006m.g 23.6947 23.1773
cassava4.1_000008m.g 19.334 18.0297
cassava4.1_000009m.g 23.0486 22.9055
cassava4.1_000010m.g 10.0489 10.1148
cassava4.1_000011m.g 10.4731 11.3289


So, anybody has any idea about this?

Best,
Yang