Hi,
I am trying to load the Gmax_189 mapping file for soybean. Based on previous threads, I deleted the PAC IDs from the file. Now when I try to load the file, I get the following error:

Error show mapping: Line 1643: bin has already been added 19.1 ('tetrapyrrole synthesis.magnesium chelatase' != 'tetrapyrrolesynthesis.glu-tRNA synthetase').

It looks like bin 19.1 has multiple names. Occurs other times in the file too.

Also, when I tried to download the xcel version of the mappings, the file was empty.

Thanks in advance

Michelle
magraham@iastate.edu

Hi Michelle,

i just tried loading the Gmax_189 mapping into MapMan to make sure that the original file in the MapManStore
is correct - and i loaded without problems. Deeper investigation shows that something must have gone a bit wrong
when you deleted the PACID portions of the gene identifiers, because in the original BIN tree the bin
"tetrapyrrole synthesis.glu-tRNA synthetase" has the code 19.1 and the bin "tetrapyrrole synthesis.magnesium chelatase"
has the bin 19.10. I would suggest that you start again from the originally downloaded file and check the method you
used to remove the PACID sections - it looks like it had some unexpected side effects.

Concerning the empty excel file - there really seems to be a problem on our side - we will investigate this. In the meantime,
if you prefer to view/edit the mapping file in Excel, you can import the text file into excel using the "Data"->"Get external data"->
"import text file" function. When importing, please make sure that you set the first column to "text" format and use the "tab"
as the column separator.

I hope this helps - best greetings,
Marc

Just a side note
19.10=>19.1 happens very often in Excel if the cells are not marked as text before copying things inside.

cheers
björn