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Problem with Ppersica IDs

Problem with Ppersica IDs
Vastaus
27.4.2017 20:55
Hi!

I had a problem when I tried using IDs from Ppersica. It is the same problem posted in here: http://mapman.gabipd.org/forum/-/message_boards/message/121552. That is because Setaria italica has the same kind of IDs and nowadays they are not updated with the new versions of their genomes...

example:
si037154m|pacid:19682342
ppa011788m|pacid:16843342

The message that shows up is the following:
"Data does not fit mapping used
(No data points mapped)!
Please choose the appropriate mapping which matches your data!"

I have tried obtaining PAC IDs from Phytozome and adding them or removing this part from the mapping file but there was not good result...

Please, Could anybody help me?

Thanks!

Mauro