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brassica napus mapping

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vaji safavi Ranking: Youngling Mensajes: 4 Fecha de incorporación: 18/11/11 Mensajes recientes	brassica napus mapping Respuesta 23/03/13 21:57 Hi, We are dealing with data analysis of Brassica napus microarray. As oyu know there is no complete genome sequence available. How is it possible to creat a mapping file based on our own sequences. I am not sure if using arabidopsis mapping is as good as Brassica mapping. Best Regards, Vaji
	Arriba

Marc Lohse

Ranking: Jedi Master

Mensajes: 271

Fecha de incorporación: 30/06/09

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RE: brassica napus mapping

10/04/13 16:11 en respuesta a vaji safavi.

Hi Vaji,

if you have your own proteome or transcriptome sequence set for Brassica napus you can generate
a mapping using our mercator pipeline (http://mapman.gabipd.org/web/guest/app/mercator).

In case the set is too large for submission via the web interface please contact me and send me
the sequences via https://cryptshare.mpg.de/index.php?lg=en

I will manually submit an annotation job to the annotation pipeline.

cheers,
Marc

Arriba