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Working with non-sequenced plant

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Dear nova Ranking: Youngling Mensajes: 1 Fecha de incorporación: 15/10/09 Mensajes recientes	Working with non-sequenced plant Respuesta 22/09/09 9:42 Hi all, I'm working in a transcriptomics analysis of a plant with no genome sequence available. Could I ask you for your mapping files for Arabidopsis, Poplar and Vitis in a text format. I would greatly appreciate your help with this.
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Marc Lohse

Ranking: Jedi Master

Mensajes: 271

Fecha de incorporación: 30/06/09

Mensajes recientes

Re: Working with non-sequenced plant

28/09/09 14:18 en respuesta a Dear nova.

Hi nova,

i can send you the requested mappings in text format if you tell me an email adresss to send them to. Alternatively i could suggest that you use our automatic classification tool mercator that can assign MapMan bins to unknown genes based on their nucleotide sequence. There is a webpage via which you can submit a small amount (up to 1000000 bp) of sequence data - if you have more do not hesitate to contact me. I can start larger classifacation jobs manually.

http://www.gabipd.org/biotools/mercator/

Best greetings,
Marc
(lohse@mpimp-golm.mpg.de)

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