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Can I use Mapman to analyze Maize data?

Can I use Mapman to analyze Maize data?
Resposta
24/09/08 11:20
I read a paper (Doehlemann 2008) were they adapted mapman for to maize. How can this be done? What do I need to do to be able to analyze my maize data using mapman?

Many Thanks

Re: Can I use Mapman to analyze Maize data?
Resposta
24/09/08 11:42 com a resposta a Dear Root.
Hi,

absolutely you just need the latest version and the mapping file Zma_Affy July. In mappman right click on mapping files download
It should be listed then.

I only works for the Maize Affymetrix type experiments though.

best wishes,
björn

Re: Can I use Mapman to analyze Maize data?
Resposta
24/09/08 12:18 com a resposta a Dear Root.
Thanks!
That's what I needed

Re: Can I use Mapman to analyze Maize data?
Resposta
08/09/09 01:41 com a resposta a Dear Root.
Hi Bjoern,

As I understand, the mapping has only been done for Maize affimetrix... is that correct?
Is anybody doing the gene binning or the mapping file for the Maizearray from Arizona University?

cheers
Axel Tiessen
atiessen@ira.cinvestav.mx
PD. Greeting from Mexico!

Re: Can I use Mapman to analyze Maize data?
Resposta
09/09/09 12:07 com a resposta a Dear Root.
Hi Axel,

if you point me to the place where i can find the necessary information about this chip (e.g. oligo sequences etc.) i can do a cross-mapping using already existing mappings.

best greetings,
Marc

RE: Re: Can I use Mapman to analyze Maize data?
Resposta
15/04/11 19:06 com a resposta a Marc Lohse.
Hi Marc,

I am interested in the process of what Axel asked you about 2 years ago.
Have you done the cross-mapping for the oligos from the maize oligonucleotide array from the University of Arizona?
For info, the sequence file can be found at http://www.maizearray.org/maize_search_overview.shtml
Thanks for posting me.

Best regards,
Christelle

RE: Re: Can I use Mapman to analyze Maize data?
Resposta
21/06/19 03:51 com a resposta a Marc Lohse.
hi dear
My gene id is (eg.Zm00001d000310)but the mappings like this(eg.zm.1076.1.s1_at) how to find maizev4 version id.
i really need your help!!!thanks thanks thanks!